ErmineJ now requires Java 8 Updated external URLs for GO terms Multi-gene-mapping microarray probes listed in Gemma platform annotation files are now ignored by default. This behaviour can be modified through a configuration. Changes for compatibility with the new Gemma RESTful API Mac OS distribution now a DMG file.
This release fixes several problems reported by users as well as including some documentation updates. The “generic” distribution of the software had an error in the configuration causing it to fail to execute. The logging configuration was causing some problems for command line use. In the details screen, if your “raw data” matrix is missing […]
This release fixes several issues: Quicklists did not correctly deal with genes in your hitlist that are unannotated (are not members of any gene groups). Error handling for the “multifunctionality diagnostics” has been improved. Problems with selecting score files and poor interaction with the file validation in the Analysis Wizard (bug 3874) The ermineJ log […]
We are excited to announce a major new release of ErmineJ. There are a number of new features, and overall the software is improved and easier to use. Some highlights: Introduction of diagnostics and corrections for “gene multifunctionality”. See the documentation for details. Introduction of a new gene set scoring method based on precision-recall. See […]
Version 2.1.22 – (November 2010) Fixes a CLI bug that caused gene score file to be required even when using the correlation method. This only affects users of the command line tool. Version 2.1.18 – (July 2009) Changes include: Fix broken links on GO file documentation page. Update our mailing list address. Old subscribers have […]